Imputing and predicting quantitative genetic interactions in epistatic MAPs

Publication Type:

Book Chapter

Source:

Network Biology: Methods and Protocols (In Press)

Keywords:

bioinformatics; emaps; imputation; krogan

Abstract:

<p>Epistatic miniarray profiles (E-MAPs) are a high-throughput approach capable of quantifying aggravating or alleviating genetic interactions between gene pairs. The datasets resulting from E-MAP experiments typically take the form of a symmetric pairwise matrix of interaction scores. These datasets have a significant number of missing values - up to 35% - that can reduce the effectiveness of some data analysis techniques and prevent the use of others.</p>

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